A0A251IXZ3 protein (Manihot esculenta) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A251IXZ3

Plus3 domain-containing protein. (660 aa)

Predicted Functional Partners:

A0A2C9UCK9

0.996

A0A2C9UB87

0.992

A0A2C9W6I5

0.992

A0A2C9UZI9

0.991

A0A2C9VGT2

0.991

A0A2C9W4Q9

0.991

A0A2C9WIV2

0.991

A0A2C9UK39

0.979

A0A2C9VP19

0.979

A0A251L4P4

0.974

Your Current Organism:

Manihot esculenta

NCBI taxonomy Id: 3983
Other names: M. esculenta, Manihot esculenta Crantz, Manihot utilissima, cassava, manioc, tapioca, yuca

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A251IXZ3	A0A251L4P4	Plus3 domain-containing protein.	Uncharacterized protein.	0.974
A0A251IXZ3	A0A2C9UB87	Plus3 domain-containing protein.	TPR_REGION domain-containing protein.	0.992
A0A251IXZ3	A0A2C9UCK9	Plus3 domain-containing protein.	Uncharacterized protein.	0.996
A0A251IXZ3	A0A2C9UK39	Plus3 domain-containing protein.	Uncharacterized protein.	0.979
A0A251IXZ3	A0A2C9UZI9	Plus3 domain-containing protein.	Uncharacterized protein.	0.991
A0A251IXZ3	A0A2C9VGT2	Plus3 domain-containing protein.	Transcription elongation factor spt6; Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII). Belongs to the SPT6 family.	0.991
A0A251IXZ3	A0A2C9VP19	Plus3 domain-containing protein.	Uncharacterized protein.	0.979
A0A251IXZ3	A0A2C9W4Q9	Plus3 domain-containing protein.	Uncharacterized protein.	0.991
A0A251IXZ3	A0A2C9W6I5	Plus3 domain-containing protein.	Uncharacterized protein.	0.992
A0A251IXZ3	A0A2C9WIV2	Plus3 domain-containing protein.	Transcription elongation factor SPT4 homolog; May regulate transcription elongation by RNA polymerase II. May enhance transcriptional pausing at sites proximal to the promoter, which may in turn facilitate the assembly of an elongation competent RNA polymerase II complex; Belongs to the SPT4 family.	0.991
A0A251L4P4	A0A251IXZ3	Uncharacterized protein.	Plus3 domain-containing protein.	0.974
A0A251L4P4	A0A2C9UB87	Uncharacterized protein.	TPR_REGION domain-containing protein.	0.978
A0A251L4P4	A0A2C9UCK9	Uncharacterized protein.	Uncharacterized protein.	0.990
A0A251L4P4	A0A2C9UK39	Uncharacterized protein.	Uncharacterized protein.	0.953
A0A251L4P4	A0A2C9UZI9	Uncharacterized protein.	Uncharacterized protein.	0.965
A0A251L4P4	A0A2C9VGT2	Uncharacterized protein.	Transcription elongation factor spt6; Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII). Belongs to the SPT6 family.	0.990
A0A251L4P4	A0A2C9VP19	Uncharacterized protein.	Uncharacterized protein.	0.953
A0A251L4P4	A0A2C9W4Q9	Uncharacterized protein.	Uncharacterized protein.	0.965
A0A251L4P4	A0A2C9W6I5	Uncharacterized protein.	Uncharacterized protein.	0.978
A0A251L4P4	A0A2C9WIV2	Uncharacterized protein.	Transcription elongation factor SPT4 homolog; May regulate transcription elongation by RNA polymerase II. May enhance transcriptional pausing at sites proximal to the promoter, which may in turn facilitate the assembly of an elongation competent RNA polymerase II complex; Belongs to the SPT4 family.	0.988