Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
A0A251KCS840S ribosomal protein S27. (86 aa)    
Predicted Functional Partners:
A0A251JYV4
Uncharacterized protein; Belongs to the universal ribosomal protein uS12 family.
   
 0.997
A0A251JGA3
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
   
 0.996
A0A251LL41
Uncharacterized protein; Belongs to the universal ribosomal protein uS8 family.
   
 0.995
A0A251K8J8
40S ribosomal protein S21; Belongs to the eukaryotic ribosomal protein eS21 family.
   
 0.994
A0A2C9UH90
Uncharacterized protein.
   
 0.994
A0A2C9V208
40S ribosomal protein S26; Belongs to the eukaryotic ribosomal protein eS26 family.
   
 0.994
A0A2C9VH73
40S ribosomal protein S21; Belongs to the eukaryotic ribosomal protein eS21 family.
   
 0.994
A0A2C9VLA1
40S ribosomal protein S26; Belongs to the eukaryotic ribosomal protein eS26 family.
   
 0.994
A0A251JYK2
Uncharacterized protein.
   
 0.993
A0A251KYV3
Uncharacterized protein; Belongs to the universal ribosomal protein uS11 family.
   
 0.993
Your Current Organism:
Manihot esculenta
NCBI taxonomy Id: 3983
Other names: M. esculenta, Manihot esculenta Crantz, Manihot utilissima, cassava, manioc, tapioca, yuca
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