A0A251LUQ0 protein (Manihot esculenta) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A251LUQ0

HTH myb-type domain-containing protein. (756 aa)

Predicted Functional Partners:

A0A2C9VTV8

0.901

A0A2C9W324

0.619

A0A251IRQ1

0.547

A0A2C9UJV4

0.538

A0A2C9VP92

0.538

A0A2C9WP49

0.532

A0A2C9UE78

0.516

A0A2C9VC37

0.513

A0A251J5Q5

0.508

A0A2C9UJK8

0.508

Your Current Organism:

Manihot esculenta

NCBI taxonomy Id: 3983
Other names: M. esculenta, Manihot esculenta Crantz, Manihot utilissima, cassava, manioc, tapioca, yuca

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A251IRQ1	A0A251J5Q5	Uncharacterized protein.	PAS domain-containing protein.	0.994
A0A251IRQ1	A0A251LUQ0	Uncharacterized protein.	HTH myb-type domain-containing protein.	0.547
A0A251IRQ1	A0A2C9UJV4	Uncharacterized protein.	Uncharacterized protein.	0.955
A0A251IRQ1	A0A2C9VC37	Uncharacterized protein.	Phytochrome; Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light: the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region.	0.617
A0A251IRQ1	A0A2C9VP92	Uncharacterized protein.	Uncharacterized protein.	0.955
A0A251IRQ1	A0A2C9VTV8	Uncharacterized protein.	HTH myb-type domain-containing protein.	0.547
A0A251IRQ1	A0A2C9W324	Uncharacterized protein.	Uncharacterized protein.	0.449
A0A251IRQ1	A0A2C9WP49	Uncharacterized protein.	RIC1 domain-containing protein.	0.616
A0A251J5Q5	A0A251IRQ1	PAS domain-containing protein.	Uncharacterized protein.	0.994
A0A251J5Q5	A0A251LUQ0	PAS domain-containing protein.	HTH myb-type domain-containing protein.	0.508
A0A251J5Q5	A0A2C9UJV4	PAS domain-containing protein.	Uncharacterized protein.	0.683
A0A251J5Q5	A0A2C9VC37	PAS domain-containing protein.	Phytochrome; Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light: the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region.	0.602
A0A251J5Q5	A0A2C9VP92	PAS domain-containing protein.	Uncharacterized protein.	0.683
A0A251J5Q5	A0A2C9VTV8	PAS domain-containing protein.	HTH myb-type domain-containing protein.	0.508
A0A251J5Q5	A0A2C9W324	PAS domain-containing protein.	Uncharacterized protein.	0.400
A0A251LUQ0	A0A251IRQ1	HTH myb-type domain-containing protein.	Uncharacterized protein.	0.547
A0A251LUQ0	A0A251J5Q5	HTH myb-type domain-containing protein.	PAS domain-containing protein.	0.508
A0A251LUQ0	A0A2C9UE78	HTH myb-type domain-containing protein.	Uncharacterized protein.	0.516
A0A251LUQ0	A0A2C9UJK8	HTH myb-type domain-containing protein.	Uncharacterized protein.	0.508
A0A251LUQ0	A0A2C9UJV4	HTH myb-type domain-containing protein.	Uncharacterized protein.	0.538