STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A2C9UBF8Uncharacterized protein. (1936 aa)    
Predicted Functional Partners:
A0A2C9VPU0
CPSF_A domain-containing protein.
    
 
 0.982
A0A2C9W5P7
Uracil-DNA glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine.
    
 
 0.970
A0A2C9WA14
DDA1 domain-containing protein.
    
 0.956
A0A2C9U5Q6
CULLIN_2 domain-containing protein; Belongs to the cullin family.
   
 
 0.948
A0A2C9UGA6
CULLIN_2 domain-containing protein; Belongs to the cullin family.
   
 
 0.948
A0A2C9UHD7
HD domain-containing protein.
    
 
 0.928
A0A2C9UT64
Uncharacterized protein.
    
 
 0.928
A0A2C9UT82
HD_domain domain-containing protein.
    
 
 0.928
A0A2C9UXP7
RING-type domain-containing protein.
    
 
 0.916
A0A2C9W2M3
RING-type domain-containing protein.
    
 
 0.916
Your Current Organism:
Manihot esculenta
NCBI taxonomy Id: 3983
Other names: M. esculenta, Manihot esculenta Crantz, Manihot utilissima, cassava, manioc, tapioca, yuca
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