STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A2C9UGD0Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). (897 aa)    
Predicted Functional Partners:
A0A2C9W4U7
Transcription initiation factor TFIID subunit 10; TAFs are components of the transcription factor IID (TFIID) complex that is essential for mediating regulation of RNA polymerase transcription; Belongs to the TAF10 family.
    
 0.764
A0A2C9UEC7
TPR_REGION domain-containing protein.
   
 0.756
A0A2C9VWV4
Peptidase_M1 domain-containing protein.
    
 0.748
A0A2C9UEH2
WD_REPEATS_REGION domain-containing protein.
    
 0.740
A0A2C9VI80
Uncharacterized protein.
    
 0.740
A0A251KJL1
APC1_C domain-containing protein.
    
 0.724
A0A2C9UW82
Protein arginine N-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily.
   
 0.714
A0A2C9U9F5
TAFII28 domain-containing protein.
   
 0.707
A0A2C9UT35
Uncharacterized protein.
    
  0.700
A0A2C9WDS8
Uncharacterized protein.
    
 0.689
Your Current Organism:
Manihot esculenta
NCBI taxonomy Id: 3983
Other names: M. esculenta, Manihot esculenta Crantz, Manihot utilissima, cassava, manioc, tapioca, yuca
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