STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A2C9V2J6Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family. (389 aa)    
Predicted Functional Partners:
A0A251JKG1
Uncharacterized protein; Belongs to the eukaryotic ribosomal protein eL38 family.
   
 0.978
A0A2C9U518
Uncharacterized protein; Belongs to the universal ribosomal protein uL5 family.
  
 0.978
A0A2C9WGA7
U1-type domain-containing protein.
   
 
 0.974
A0A2C9W9B1
60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family.
   
 0.967
A0A251JYV4
Uncharacterized protein; Belongs to the universal ribosomal protein uS12 family.
  
 
 0.963
A0A251J6Y8
Uncharacterized protein.
   
 0.957
A0A251L5W7
Uncharacterized protein.
   
 0.955
A0A251JCP9
Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.
  
 
 0.954
A0A2C9UGG8
Uncharacterized protein.
  
 
 0.953
A0A2C9W5Z9
50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.
   
 
 0.951
Your Current Organism:
Manihot esculenta
NCBI taxonomy Id: 3983
Other names: M. esculenta, Manihot esculenta Crantz, Manihot utilissima, cassava, manioc, tapioca, yuca
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