STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A2C9VAP1Uncharacterized protein. (356 aa)    
Predicted Functional Partners:
A0A2C9USA9
LOB domain-containing protein.
    
 
 0.889
A0A2C9U650
Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
   
  
 0.576
A0A2C9V953
DNA-(apurinic or apyrimidinic site) lyase; Belongs to the DNA repair enzymes AP/ExoA family.
      
 0.550
A0A2C9WB38
Uncharacterized protein.
    
 
 0.550
A0A2C9W0L2
Protein HIRA; Required for replication-independent chromatin assembly and for the periodic repression of histone gene transcription during the cell cycle; Belongs to the WD repeat HIR1 family.
    
 
 0.547
A0A2C9WAC9
WD_REPEATS_REGION domain-containing protein.
   
 0.539
A0A2C9WIK6
WD_REPEATS_REGION domain-containing protein.
   
 0.539
A0A2C9UJI0
Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.
    
 0.536
A0A251IQC6
Uncharacterized protein.
      
 0.526
A0A2C9VXG6
Uncharacterized protein.
      
 0.526
Your Current Organism:
Manihot esculenta
NCBI taxonomy Id: 3983
Other names: M. esculenta, Manihot esculenta Crantz, Manihot utilissima, cassava, manioc, tapioca, yuca
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