STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A2C9VJK6Helicase ATP-binding domain-containing protein. (424 aa)    
Predicted Functional Partners:
A0A2C9VLL7
Helicase C-terminal domain-containing protein.
 
     0.952
A0A2C9W354
ERCC4 domain-containing protein.
   
 0.787
A0A2C9UD04
Uncharacterized protein.
  
0.776
A0A2C9W2V6
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.751
A0A2C9V4C1
Uncharacterized protein; Belongs to the actin family.
    
 0.729
A0A2C9VZN6
RuvB-like helicase; Belongs to the RuvB family.
    
 0.723
A0A2C9V2A2
RECA_2 domain-containing protein.
  
 
 0.721
A0A2C9WEA4
DNA ligase.
   
 0.712
A0A2C9W4K6
DNA repair protein RAD51 homolog; Binds to single and double-stranded DNA and exhibits DNA- dependent ATPase activity. Unwinds duplex DNA. Component of the meiotic recombination pathway. Seems to play a role in mediating chromosome homology search, chromosome pairing and synapsis at early stages and probably chromosome crossing-over at later stages in meiosis. Probably is involved in the repair of meiotic double strand breaks (DBSs) and in homologous recombination; Belongs to the RecA family. RAD51 subfamily.
  
 
 0.710
A0A2C9U6C5
Uncharacterized protein.
   
 0.705
Your Current Organism:
Manihot esculenta
NCBI taxonomy Id: 3983
Other names: M. esculenta, Manihot esculenta Crantz, Manihot utilissima, cassava, manioc, tapioca, yuca
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.