STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A2C9VLP0Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (417 aa)    
Predicted Functional Partners:
A0A251L0V4
General transcription factor IIH subunit.
   
 0.998
A0A2C9VCR0
CYCLIN domain-containing protein; Belongs to the cyclin family.
    
 0.998
A0A2C9WFX5
Uncharacterized protein.
    
 0.998
A0A251LKX1
Uncharacterized protein.
   
 0.997
A0A2C9U4R7
RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.
    
 0.997
A0A2C9ULY6
Uncharacterized protein.
   
 0.997
A0A2C9VU83
Helicase ATP-binding domain-containing protein.
    
 0.996
A0A2C9UKS5
MAT1 domain-containing protein.
   
 0.995
A0A251LE14
TFIIE beta domain-containing protein.
   
 0.987
A0A2C9WI75
Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase.
   
 0.987
Your Current Organism:
Manihot esculenta
NCBI taxonomy Id: 3983
Other names: M. esculenta, Manihot esculenta Crantz, Manihot utilissima, cassava, manioc, tapioca, yuca
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.