A0A2C9VML5 protein (Manihot esculenta) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A2C9VML5

Protein kinase domain-containing protein. (836 aa)

Predicted Functional Partners:

A0A2C9VTI9

0.856

A0A2C9WAC2

0.856

A0A2C9U7I8

0.744

A0A2C9UHK8

0.744

A0A2C9VLM5

0.744

A0A251IWA0

0.610

A0A251J7X3

0.610

A0A251L749

0.610

A0A2C9UA77

0.610

A0A2C9UC42

0.610

Your Current Organism:

Manihot esculenta

NCBI taxonomy Id: 3983
Other names: M. esculenta, Manihot esculenta Crantz, Manihot utilissima, cassava, manioc, tapioca, yuca

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A251IWA0	A0A251J7X3	Uncharacterized protein.	Uncharacterized protein.	0.540
A0A251IWA0	A0A251L749	Uncharacterized protein.	Uncharacterized protein.	0.544
A0A251IWA0	A0A2C9UA77	Uncharacterized protein.	Uncharacterized protein.	0.540
A0A251IWA0	A0A2C9VML5	Uncharacterized protein.	Protein kinase domain-containing protein.	0.610
A0A251J7X3	A0A251IWA0	Uncharacterized protein.	Uncharacterized protein.	0.540
A0A251J7X3	A0A251L749	Uncharacterized protein.	Uncharacterized protein.	0.540
A0A251J7X3	A0A2C9UA77	Uncharacterized protein.	Uncharacterized protein.	0.540
A0A251J7X3	A0A2C9VML5	Uncharacterized protein.	Protein kinase domain-containing protein.	0.610
A0A251L749	A0A251IWA0	Uncharacterized protein.	Uncharacterized protein.	0.544
A0A251L749	A0A251J7X3	Uncharacterized protein.	Uncharacterized protein.	0.540
A0A251L749	A0A2C9UA77	Uncharacterized protein.	Uncharacterized protein.	0.543
A0A251L749	A0A2C9VML5	Uncharacterized protein.	Protein kinase domain-containing protein.	0.610
A0A2C9U7I8	A0A2C9VML5	Adenylyl cyclase-associated protein; Belongs to the CAP family.	Protein kinase domain-containing protein.	0.744
A0A2C9UA77	A0A251IWA0	Uncharacterized protein.	Uncharacterized protein.	0.540
A0A2C9UA77	A0A251J7X3	Uncharacterized protein.	Uncharacterized protein.	0.540
A0A2C9UA77	A0A251L749	Uncharacterized protein.	Uncharacterized protein.	0.543
A0A2C9UA77	A0A2C9VML5	Uncharacterized protein.	Protein kinase domain-containing protein.	0.610
A0A2C9UC42	A0A2C9VML5	Auxin-responsive protein; Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.	Protein kinase domain-containing protein.	0.610
A0A2C9UHK8	A0A2C9VML5	Adenylyl cyclase-associated protein; Belongs to the CAP family.	Protein kinase domain-containing protein.	0.744
A0A2C9VLM5	A0A2C9VML5	CAP_N domain-containing protein.	Protein kinase domain-containing protein.	0.744