STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A2C9VSC6Uncharacterized protein; Belongs to the helicase family. Dicer subfamily. (1982 aa)    
Predicted Functional Partners:
A0A2C9UGG8
Uncharacterized protein.
  
 
 0.866
A0A251L5W7
Uncharacterized protein.
   
 
 0.853
A0A2C9VSU3
Uncharacterized protein.
   
 
 0.849
A0A251JHW3
Uncharacterized protein.
   
 
 0.841
A0A2C9W5Z9
50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.
  
 
 0.819
A0A2C9VMA1
L51_S25_CI-B8 domain-containing protein.
   
 
 0.812
A0A2C9U4A2
Uncharacterized protein.
   
 
 0.809
A0A2C9UXG5
Uncharacterized protein.
   
 
 0.802
A0A2C9UJ52
Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.
   
 
 0.801
A0A2C9VWV5
Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.
   
 
 0.801
Your Current Organism:
Manihot esculenta
NCBI taxonomy Id: 3983
Other names: M. esculenta, Manihot esculenta Crantz, Manihot utilissima, cassava, manioc, tapioca, yuca
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