STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A2C9WDT7tRNA-synt_1c domain-containing protein; Belongs to the class-I aminoacyl-tRNA synthetase family. (584 aa)    
Predicted Functional Partners:
A0A2C9V4R6
Glutamyl-tRNA reductase; Belongs to the glutamyl-tRNA reductase family.
     
 0.991
A0A2C9VXK6
Glutamyl-tRNA reductase; Belongs to the glutamyl-tRNA reductase family.
     
 0.991
A0A2C9W9B1
60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family.
   
 0.987
A0A251JKG1
Uncharacterized protein; Belongs to the eukaryotic ribosomal protein eL38 family.
   
 0.984
A0A251JE38
Uncharacterized protein; Belongs to the eukaryotic ribosomal protein eL42 family.
   
 0.981
A0A251JGA3
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
   
 
 0.955
A0A251J6Y8
Uncharacterized protein.
   
 0.949
A0A2C9V9V4
Uncharacterized protein.
   
 0.949
A0A2C9VD97
Uncharacterized protein.
   
 0.949
A0A2C9U6G7
Glutamate decarboxylase; Belongs to the group II decarboxylase family.
    
 0.934
Your Current Organism:
Manihot esculenta
NCBI taxonomy Id: 3983
Other names: M. esculenta, Manihot esculenta Crantz, Manihot utilissima, cassava, manioc, tapioca, yuca
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