STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFM41403.1Ubiquinone/menaquinone biosynthesis C-methylase UbiE. (278 aa)    
Predicted Functional Partners:
SFM41219.1
Undecaprenyl pyrophosphate synthetase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.
  
 
 0.686
SFM65470.1
NADH-quinone oxidoreductase subunit F.
    
 0.676
SFM41319.1
Hypothetical protein.
   
   0.564
dxr
1-deoxy-D-xylulose 5-phosphate reductoisomerase; Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4- phosphate (MEP); Belongs to the DXR family.
     
 0.551
SFM41340.1
Phage-related replication protein YjqB, UPF0714/DUF867 family.
       0.545
SFM41360.1
Hypothetical protein.
       0.545
SFM41382.1
beta-N-acetylhexosaminidase.
       0.545
SFM41300.1
tRNA threonylcarbamoyladenosine biosynthesis protein TsaB.
  
    0.544
SFM41281.1
Site-2 protease. Metallo peptidase. MEROPS family M50B.
       0.538
SFM41240.1
Phosphatidate cytidylyltransferase; Belongs to the CDS family.
       0.527
Your Current Organism:
Thermodesulforhabdus norvegica
NCBI taxonomy Id: 39841
Other names: DSM 9990, Desulforhabdus acetothermus, T. norvegica, Thermodesulforhabdus norvegicus, strain A8444
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.