STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFM64451.1Two component, sigma54 specific, transcriptional regulator, Fis family. (448 aa)    
Predicted Functional Partners:
SFM84033.1
PAS domain S-box-containing protein.
  
 0.950
SFM63778.1
PAS domain S-box-containing protein.
 
 0.914
SFM64428.1
PAS domain S-box-containing protein.
 
 0.909
SFM86103.1
PAS domain S-box-containing protein.
  
0.902
SFM44861.1
Two-component system, NtrC family, sensor histidine kinase HydH.
 0.858
SFN01219.1
RNA polymerase, sigma 54 subunit, RpoN/SigL; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
  
 0.802
SFM78152.1
Signal transduction histidine kinase.
  
0.799
SFN08954.1
PAS domain S-box-containing protein.
 
 0.786
SFM79497.1
PAS domain S-box-containing protein.
 
 0.779
SFM49412.1
PAS domain S-box-containing protein.
 
0.764
Your Current Organism:
Thermodesulforhabdus norvegica
NCBI taxonomy Id: 39841
Other names: DSM 9990, Desulforhabdus acetothermus, T. norvegica, Thermodesulforhabdus norvegicus, strain A8444
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.