SFM69063.1 protein (Thermodesulforhabdus norvegica)

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second shell of interactors

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Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

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Score

SFM69063.1

Uncharacterized protein. (180 aa)

Predicted Functional Partners:

rpmF

0.982

rpsC

0.979

rplK

0.915

rpsF

0.894

rpsP

0.893

rpsB

0.892

infC

0.891

rplA

0.889

rplR

0.887

rplU

0.885

Your Current Organism:

Thermodesulforhabdus norvegica

NCBI taxonomy Id: 39841
Other names: DSM 9990, Desulforhabdus acetothermus, T. norvegica, Thermodesulforhabdus norvegicus, strain A8444

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SFM69063.1	infC	SAMN05660836_01215	SAMN05660836_01026	Uncharacterized protein.	Bacterial translation initiation factor 3 (bIF-3); IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.	0.891
SFM69063.1	rplA	SAMN05660836_01215	SAMN05660836_02701	Uncharacterized protein.	LSU ribosomal protein L1P; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release.	0.889
SFM69063.1	rplK	SAMN05660836_01215	SAMN05660836_02700	Uncharacterized protein.	LSU ribosomal protein L11P; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.	0.915
SFM69063.1	rplR	SAMN05660836_01215	SAMN05660836_02376	Uncharacterized protein.	LSU ribosomal protein L18P; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.	0.887
SFM69063.1	rplU	SAMN05660836_01215	SAMN05660836_01746	Uncharacterized protein.	Large subunit ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.885
SFM69063.1	rpmF	SAMN05660836_01215	SAMN05660836_01216	Uncharacterized protein.	LSU ribosomal protein L32P; Belongs to the bacterial ribosomal protein bL32 family.	0.982
SFM69063.1	rpsB	SAMN05660836_01215	SAMN05660836_00111	Uncharacterized protein.	SSU ribosomal protein S2P; Belongs to the universal ribosomal protein uS2 family.	0.892
SFM69063.1	rpsC	SAMN05660836_01215	SAMN05660836_02385	Uncharacterized protein.	SSU ribosomal protein S3P; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.	0.979
SFM69063.1	rpsF	SAMN05660836_01215	SAMN05660836_01715	Uncharacterized protein.	Small subunit ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.	0.894
SFM69063.1	rpsP	SAMN05660836_01215	SAMN05660836_00305	Uncharacterized protein.	SSU ribosomal protein S16P; Belongs to the bacterial ribosomal protein bS16 family.	0.893
infC	SFM69063.1	SAMN05660836_01026	SAMN05660836_01215	Bacterial translation initiation factor 3 (bIF-3); IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.	Uncharacterized protein.	0.891
infC	rplA	SAMN05660836_01026	SAMN05660836_02701	Bacterial translation initiation factor 3 (bIF-3); IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.	LSU ribosomal protein L1P; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release.	0.935
infC	rplK	SAMN05660836_01026	SAMN05660836_02700	Bacterial translation initiation factor 3 (bIF-3); IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.	LSU ribosomal protein L11P; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.	0.945
infC	rplR	SAMN05660836_01026	SAMN05660836_02376	Bacterial translation initiation factor 3 (bIF-3); IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.	LSU ribosomal protein L18P; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.	0.882
infC	rplU	SAMN05660836_01026	SAMN05660836_01746	Bacterial translation initiation factor 3 (bIF-3); IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.	Large subunit ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.940
infC	rpmF	SAMN05660836_01026	SAMN05660836_01216	Bacterial translation initiation factor 3 (bIF-3); IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.	LSU ribosomal protein L32P; Belongs to the bacterial ribosomal protein bL32 family.	0.918
infC	rpsB	SAMN05660836_01026	SAMN05660836_00111	Bacterial translation initiation factor 3 (bIF-3); IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.	SSU ribosomal protein S2P; Belongs to the universal ribosomal protein uS2 family.	0.987
infC	rpsC	SAMN05660836_01026	SAMN05660836_02385	Bacterial translation initiation factor 3 (bIF-3); IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.	SSU ribosomal protein S3P; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.	0.985
infC	rpsF	SAMN05660836_01026	SAMN05660836_01715	Bacterial translation initiation factor 3 (bIF-3); IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.	Small subunit ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.	0.986
infC	rpsP	SAMN05660836_01026	SAMN05660836_00305	Bacterial translation initiation factor 3 (bIF-3); IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.	SSU ribosomal protein S16P; Belongs to the bacterial ribosomal protein bS16 family.	0.979