STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFM78215.1DNA-binding transcriptional regulator, ArsR family. (129 aa)    
Predicted Functional Partners:
SFM78235.1
Ubiquinone/menaquinone biosynthesis C-methylase UbiE.
 
   
 0.808
birA
Bifunctional ligase/repressor BirA; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.
     
 0.481
SFM78071.1
CRISPR-associated helicase, Cas3 family.
 
   
 0.481
SFM49455.1
Cu+-exporting ATPase.
  
  
 0.476
SFM78195.1
Iron complex outermembrane recepter protein.
       0.434
SFM78152.1
Signal transduction histidine kinase.
     
 0.431
SFM75166.1
NAD-dependent deacetylase.
  
 
  0.418
cobB
NAD-dependent deacetylase; Belongs to the sirtuin family. Class III subfamily.
  
 
  0.418
SFM72275.1
cysteinyl-tRNA synthetase.
    
 0.417
SFM52211.1
Diaminohydroxyphosphoribosylaminopyrimidine deaminase; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.
   
  
 0.415
Your Current Organism:
Thermodesulforhabdus norvegica
NCBI taxonomy Id: 39841
Other names: DSM 9990, Desulforhabdus acetothermus, T. norvegica, Thermodesulforhabdus norvegicus, strain A8444
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.