STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFM93377.1Polysaccharide deacetylase. (283 aa)    
Predicted Functional Partners:
SFM72819.1
Predicted glycosyl transferase.
     0.898
SFM72721.1
Glycosyltransferase involved in cell wall bisynthesis.
 
  
 0.808
SFM72752.1
Glycosyltransferase involved in cell wall bisynthesis.
 
  
 0.804
SFM72694.1
Predicted glycosyl transferase.
     0.803
SFN06397.1
Putative ABC transport system ATP-binding protein.
 
     0.782
SFM72925.1
MacB-like core domain-containing protein.
 
    0.780
SFM93395.1
Radical SAM superfamily protein.
       0.780
SFM74930.1
Glycosyltransferase, GT2 family.
  
  
 0.772
SFM93352.1
Hypothetical protein.
       0.732
SFM64642.1
Glycosyltransferase, GT2 family.
  
 
 0.710
Your Current Organism:
Thermodesulforhabdus norvegica
NCBI taxonomy Id: 39841
Other names: DSM 9990, Desulforhabdus acetothermus, T. norvegica, Thermodesulforhabdus norvegicus, strain A8444
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.