STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFN05844.1TRAP-type C4-dicarboxylate transport system, small permease component. (174 aa)    
Predicted Functional Partners:
SFN05861.1
TRAP transporter, DctM subunit.
 
 0.968
SFN05828.1
Tripartite ATP-independent transporter solute receptor, DctP family.
 
  
 0.938
SFM42609.1
TRAP transporter, DctM subunit.
 
 0.914
SFM46702.1
TRAP transporter, DctM subunit.
 
 0.910
SFM47003.1
Tripartite ATP-independent transporter, DctM component.
 
 0.909
SFM53153.1
TRAP transporter, DctM subunit.
 
 0.907
SFM42578.1
Tripartite ATP-independent transporter solute receptor, DctP family.
 
  
 0.837
SFM46960.1
Tripartite ATP-independent transporter solute receptor, DctP family.
 
  
 0.837
SFM46743.1
Tripartite ATP-independent transporter solute receptor, DctP family.
 
  
 0.831
SFM53191.1
Tripartite ATP-independent transporter solute receptor, DctP family.
 
  
 0.802
Your Current Organism:
Thermodesulforhabdus norvegica
NCBI taxonomy Id: 39841
Other names: DSM 9990, Desulforhabdus acetothermus, T. norvegica, Thermodesulforhabdus norvegicus, strain A8444
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.