STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ylbLPutative ATP-dependent protease La; COG3480 Predicted secreted protein containing a PDZ domain. (346 aa)    
Predicted Functional Partners:
ylbK
Phospholipase, patatin family protein; COG1752 Predicted esterase of the alpha-beta hydrolase superfamily.
     
 0.829
ADC49901.1
COG3091 Uncharacterized protein conserved in bacteria; Belongs to the SprT family.
 
     0.613
ylbJ
Sporulation integral membrane protein YlbJ; COG3314 Uncharacterized protein conserved in bacteria.
       0.578
escB
Ecs exoprotein ABC transporter (permease); COG4473 Predicted ABC-type exoprotein transport system, permease component.
  
     0.487
ADC50852.1
COG4483 Uncharacterized protein conserved in bacteria.
 
     0.481
yabA
DNA replication initiation control protein YabA; Involved in initiation control of chromosome replication. Belongs to the YabA family.
  
     0.476
ADC49052.1
COG4470 Uncharacterized protein conserved in bacteria.
 
     0.458
ADC48692.1
Hypothetical protein; COG0747 ABC-type dipeptide transport system, periplasmic component.
  
     0.451
ADC50920.1
Hypothetical protein; COG0517 FOG: CBS domain.
  
     0.432
pstA2
COG2244 Membrane protein involved in the export of O-antigen and teichoic acid.
  
     0.421
Your Current Organism:
Bacillus pseudofirmus
NCBI taxonomy Id: 398511
Other names: B. pseudofirmus OF4, Bacillus pseudofirmus OF4, Bacillus pseudofirmus str. OF4, Bacillus pseudofirmus strain OF4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.