Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ADC48564.1COG2072 Predicted flavoprotein involved in K+ transport. (390 aa)    
Predicted Functional Partners:
yciC
Cobalamin synthesis protein; COG0523 Putative GTPases (G3E family).
 
   
 0.714
ADC49578.1
Hypothetical protein.
  
     0.595
ADC51830.1
Hypothetical protein; COG4106 Trans-aconitate methyltransferase.
  
     0.526
ADC48562.1
Hypothetical protein.
 
     0.495
ADC50158.1
COG3486 Lysine/ornithine N-monooxygenase.
 
     0.463
ADC51662.1
YqhA; COG1366 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor).
  
     0.460
akc3
Endonuclease/exonuclease/phosphatase; COG3568 Metal-dependent hydrolase.
   
    0.459
ADC50243.1
COG2149 Predicted membrane protein.
 
     0.445
ADC48492.1
COG1366 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor).
  
     0.441
rpsN
30S ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.
       0.435
Your Current Organism:
Bacillus pseudofirmus
NCBI taxonomy Id: 398511
Other names: B. pseudofirmus OF4, Bacillus pseudofirmus OF4, Bacillus pseudofirmus str. OF4, Bacillus pseudofirmus strain OF4
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