STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lcfALong-chain fatty-acid-CoA ligase; COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II. (569 aa)    
Predicted Functional Partners:
lcfA2
Long-chain fatty-acid-CoA ligase; COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II.
 
  
 
0.943
fadB
3-hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase/isomerase; COG1250 3-hydroxyacyl-CoA dehydrogenase.
 
 
 0.687
ADC48698.1
COG1024 Enoyl-CoA hydratase/carnithine racemase; Belongs to the enoyl-CoA hydratase/isomerase family.
 
 
 0.677
yfhL
Long-chain fatty-acid-CoA ligase; COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II.
  
  
 
0.661
fadE
COG1960 Acyl-CoA dehydrogenases.
 
 0.639
lcfB
Long-chain fatty-acid-CoA ligase; COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II.
  
  
 
0.627
ADC48699.1
COG1309 Transcriptional regulator.
 
    0.623
ADC51572.1
COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II.
  
  
 
0.621
etfB
COG2086 Electron transfer flavoprotein, beta subunit.
  
  
 0.607
etfA
COG2025 Electron transfer flavoprotein, alpha subunit.
  
  
 0.590
Your Current Organism:
Bacillus pseudofirmus
NCBI taxonomy Id: 398511
Other names: B. pseudofirmus OF4, Bacillus pseudofirmus OF4, Bacillus pseudofirmus str. OF4, Bacillus pseudofirmus strain OF4
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