Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ADC48953.1Hypothetical protein. (85 aa)    
Predicted Functional Partners:
ADC48949.1
Hypothetical protein.
       0.566
ADC48950.1
TP901 family phage tail tape measure protein; COG5283 Phage-related tail protein.
       0.566
ADC48951.1
Hypothetical protein.
       0.566
ADC48952.1
Hypothetical protein.
       0.566
ADC48954.1
Hypothetical protein.
       0.533
ADC48955.1
Hypothetical protein.
       0.463
ADC48956.1
Hypothetical protein.
       0.463
ADC48957.1
Hypothetical protein.
       0.463
ADC48958.1
COG1278 Cold shock proteins.
       0.463
ADC48959.1
Hypothetical protein.
       0.463
Your Current Organism:
Bacillus pseudofirmus
NCBI taxonomy Id: 398511
Other names: B. pseudofirmus OF4, Bacillus pseudofirmus OF4, Bacillus pseudofirmus str. OF4, Bacillus pseudofirmus strain OF4
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