STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ydaGCOG3871 Uncharacterized stress protein (general stress protein 26). (139 aa)    
Predicted Functional Partners:
csbD
Stress response protein sigmaB controlled CsbD; COG3237 Uncharacterized protein conserved in bacteria; Belongs to the UPF0337 (CsbD) family.
 
    0.921
ADC48944.1
COG4876 Uncharacterized protein conserved in bacteria.
  
    0.808
ADC49568.1
Hypothetical protein.
  
    0.680
yjbC
COG0454 Histone acetyltransferase HPA2 and related acetyltransferases.
  
    0.671
ADC50899.1
Hypothetical protein.
  
     0.651
ltxH
General stress protein; COG4980 Gas vesicle protein.
   
    0.647
ADC50217.1
Hypothetical protein.
  
     0.611
ADC50989.1
Hypothetical protein; COG0702 Predicted nucleoside-diphosphate-sugar epimerases.
  
    0.565
ADC50212.1
Cell-division inhibitor; COG1090 Predicted nucleoside-diphosphate sugar epimerase.
  
    0.563
ADC51291.1
Hypothetical protein; COG1090 Predicted nucleoside-diphosphate sugar epimerase.
  
    0.563
Your Current Organism:
Bacillus pseudofirmus
NCBI taxonomy Id: 398511
Other names: B. pseudofirmus OF4, Bacillus pseudofirmus OF4, Bacillus pseudofirmus str. OF4, Bacillus pseudofirmus strain OF4
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