STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amtBAmmonium transporter; COG0004 Ammonia permease. (422 aa)    
Predicted Functional Partners:
ADC51245.1
Nitrogen regulatory PII family protein.
  
 
 0.986
ADC49515.1
Hypothetical protein; COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains.
 
     0.871
ADC49514.1
Hypothetical protein; COG0847 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases.
 
   
 0.848
gltA
COG0067 Glutamate synthase domain 1.
 
  
 0.848
kinA-2
Sporulation kinase; COG0642 Signal transduction histidine kinase.
  
 
 0.766
ADC49513.1
Transcriptional regulator, MerR family protein; COG0789 Predicted transcriptional regulators.
     
 0.727
ADC49827.1
PAS:GGDEF domain protein; COG2199 FOG: GGDEF domain.
 
    
 0.717
cysH
Phosphoadenosine phosphosulfate reductase; Reduction of activated sulfate into sulfite. Belongs to the PAPS reductase family. CysH subfamily.
      
 0.627
cysN
Adenylylsulfate kinase; Catalyzes the synthesis of activated sulfate.
      
 0.627
gltB
COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductases.
 
  
 0.611
Your Current Organism:
Bacillus pseudofirmus
NCBI taxonomy Id: 398511
Other names: B. pseudofirmus OF4, Bacillus pseudofirmus OF4, Bacillus pseudofirmus str. OF4, Bacillus pseudofirmus strain OF4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.