Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ADC49663.1Oligopeptide ABC transporter ATP-binding protein; COG4608 ABC-type oligopeptide transport system, ATPase component; Belongs to the ABC transporter superfamily. (337 aa)    
Predicted Functional Partners:
ADC49666.1
COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
 
 0.969
appC
AppC oligopeptide ABC transporter (permease); COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
 
 0.957
dppC
Dipeptide ABC transporter (permease); Part of the binding-protein-dependent transport system for dipeptides; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. OppBC subfamily.
 
 0.955
ADC49665.1
COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
 
 
 0.955
ADC49664.1
Oligopeptide ABC transporter ATP-binding protein; COG0444 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component; Belongs to the ABC transporter superfamily.
 
  
0.918
oppC
COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
 
 0.895
appB
COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
 
 
 0.866
dppB
Dipeptide ABC transporter (permease); Part of the binding-protein-dependent transport system for dipeptides; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. OppBC subfamily.
 
 
 0.862
oppB
COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
 
 
 0.855
ADC49667.1
Oligopeptide ABC transporter (oligopeptide-binding protein); COG0747 ABC-type dipeptide transport system, periplasmic component.
 
 
 0.795
Your Current Organism:
Bacillus pseudofirmus
NCBI taxonomy Id: 398511
Other names: B. pseudofirmus OF4, Bacillus pseudofirmus OF4, Bacillus pseudofirmus str. OF4, Bacillus pseudofirmus strain OF4
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