STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
asbDPetrobactin-like siderophore synthesis; COG0236 Acyl carrier protein. (91 aa)    
Predicted Functional Partners:
ctaC
Cytochrome caa3 subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
   
 
 0.937
asbE
Petrobactin-like siderophore synthesis.
  
  
 0.920
asbB
Petrobactin-like siderophore synthesis; COG4264 Siderophore synthetase component.
  
  
 0.889
asbC
Petrobactin-like siderophore synthesis; COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II.
  
 
 0.872
rplU
50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
  
 
 0.856
asbF
Petrobactin-like siderophore synthesis; COG1082 Sugar phosphate isomerases/epimerases.
  
  
 0.854
ADC49231.1
Putative acetyltransferase; COG1696 Predicted membrane protein involved in D-alanine export; Belongs to the membrane-bound acyltransferase family.
  
 
 0.852
fabD
COG0331 (acyl-carrier-protein) S-malonyltransferase.
  
 0.845
mdcE
Malonate decarboxylase, epsilon subunit; COG0331 (acyl-carrier-protein) S-malonyltransferase.
  
 0.845
rpmF
COG0333 Ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.
  
 
 0.806
Your Current Organism:
Bacillus pseudofirmus
NCBI taxonomy Id: 398511
Other names: B. pseudofirmus OF4, Bacillus pseudofirmus OF4, Bacillus pseudofirmus str. OF4, Bacillus pseudofirmus strain OF4
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