Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ADC49938.1COG0786 Na+/glutamate symporter. (468 aa)    
Predicted Functional Partners:
sigW
COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily.
   
  
 0.640
sigM
Rna polymerase sigma-70 factor, ecf sigma M subfamily protein; COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily.
   
  
 0.640
gltA
COG0067 Glutamate synthase domain 1.
      
 0.631
hslO
Disulfide bond chaperone of the HSP33 family; Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress.
     
 0.627
dpsA
Stress- and starvation-induced ferritin family DNA binding protein, gene controlled by sigma-B; COG0783 DNA-binding ferritin-like protein (oxidative damage protectant); Belongs to the Dps family.
     
 0.621
pdhD
Dihydrolipoamide dehydrogenase E3; COG1249 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes.
      
 0.618
ktrC
Potassium uptake protein KtrC; COG0569 K+ transport systems, NAD-binding component.
      
 0.618
bfmBC
COG1249 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes.
      
 0.618
fliB
Flagellin domain-containing protein Fli; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.
      
 0.618
ktrB
Potassium transport system subunit KtrB.
      
 0.618
Your Current Organism:
Bacillus pseudofirmus
NCBI taxonomy Id: 398511
Other names: B. pseudofirmus OF4, Bacillus pseudofirmus OF4, Bacillus pseudofirmus str. OF4, Bacillus pseudofirmus strain OF4
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