STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gerXBPutative spore germination protein. (362 aa)    
Predicted Functional Partners:
gerXC
Germination protein, Ger(x)C family.
 
  
 0.950
gerXA
GerA spore germination protein.
 
  
 0.879
gerXC-2
Germination protein, Ger(x)C family.
 
  
 0.789
gerXC-3
Germination protein, Ger(x)C family.
 
  
 0.789
ADC50163.1
GCN5-related N-acetyltransferase; COG1670 Acetyltransferases, including N-acetylases of ribosomal proteins.
 
     0.609
gerXA-3
GerA spore germination protein.
 
  
 0.582
gerXA-2
Spore germination protein XA.
 
  
 0.576
cotF
COG5577 Spore coat protein.
      
 0.550
spoVB
Polysaccharide exporter for spore cortex synthesis; COG2244 Membrane protein involved in the export of O-antigen and teichoic acid.
      
 0.550
yraD
COG5577 Spore coat protein.
      
 0.550
Your Current Organism:
Bacillus pseudofirmus
NCBI taxonomy Id: 398511
Other names: B. pseudofirmus OF4, Bacillus pseudofirmus OF4, Bacillus pseudofirmus str. OF4, Bacillus pseudofirmus strain OF4
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.