STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gerLASpore germination protein. (507 aa)    
Predicted Functional Partners:
gerLC
Spore germination protein GerLC.
 
  
 0.929
gerLB
Spore germination protein; COG0531 Amino acid transporters.
 
  
 0.893
spoVAD
Stage V sporulation protein AD; COG0183 Acetyl-CoA acetyltransferase.
  
  
 0.786
spoVAC
Stage V sporulation protein AC.
  
    0.782
spoVD
Stage V sporulation protein AD.
  
  
 0.781
gpr
Germination protease; Initiates the rapid degradation of small, acid-soluble proteins during spore germination; Belongs to the peptidase A25 family.
  
    0.777
spoVA
SpoVA family protein.
  
    0.775
spoVT
Stage V sporulation protein T, transcriptional regulator; COG2002 Regulators of stationary/sporulation gene expression.
  
     0.773
spoVAE
Stage V sporulation protein AE.
  
    0.773
spoVA2
Sporulation protein; COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
  
    0.772
Your Current Organism:
Bacillus pseudofirmus
NCBI taxonomy Id: 398511
Other names: B. pseudofirmus OF4, Bacillus pseudofirmus OF4, Bacillus pseudofirmus str. OF4, Bacillus pseudofirmus strain OF4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.