STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADC50852.1COG4483 Uncharacterized protein conserved in bacteria. (60 aa)    
Predicted Functional Partners:
glcK
Glucokinase; COG1940 Transcriptional regulator/sugar kinase.
  
    0.752
ADC50851.1
Hypothetical protein.
       0.751
ADC50850.1
Hypothetical protein.
 
    0.591
ADC50920.1
Hypothetical protein; COG0517 FOG: CBS domain.
  
     0.541
aspA
COG1027 Aspartate ammonia-lyase.
       0.491
ADC49901.1
COG3091 Uncharacterized protein conserved in bacteria; Belongs to the SprT family.
  
     0.490
ylbL
Putative ATP-dependent protease La; COG3480 Predicted secreted protein containing a PDZ domain.
 
     0.481
rpsK
30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.
   
    0.431
ADC48767.1
Hypothetical protein; COG0827 Adenine-specific DNA methylase.
  
     0.408
Your Current Organism:
Bacillus pseudofirmus
NCBI taxonomy Id: 398511
Other names: B. pseudofirmus OF4, Bacillus pseudofirmus OF4, Bacillus pseudofirmus str. OF4, Bacillus pseudofirmus strain OF4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.