Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ADC51250.1Hypothetical protein. (41 aa)    
Predicted Functional Partners:
cotD
Inner spore coat protein D.
       0.558
yprA
ATP-dependent RNA helicase; COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster.
       0.426
ADC51249.1
Hypothetical protein; COG3359 Predicted exonuclease; yprB.
       0.426
ADC51252.1
COG4474 Uncharacterized protein conserved in bacteria; Belongs to the UPF0398 family.
       0.419
Your Current Organism:
Bacillus pseudofirmus
NCBI taxonomy Id: 398511
Other names: B. pseudofirmus OF4, Bacillus pseudofirmus OF4, Bacillus pseudofirmus str. OF4, Bacillus pseudofirmus strain OF4
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