STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bccel_0014PFAM: ABC-type transporter, integral membrane subunit; KEGG: spermidine/putrescine transport system permease protein. (270 aa)    
Predicted Functional Partners:
Bccel_0015
Hypothetical protein; KEGG: spermidine/putrescine transport system substrate-binding protein.
 
 0.999
Bccel_0013
PFAM: ABC-type transporter, integral membrane subunit; KEGG: spermidine/putrescine transport system permease protein.
 
0.998
potA
Polyamine-transporting ATPase; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family.
 
  
  0.981
Bccel_2622
Glycerol-3-phosphate-transporting ATPase; PFAM: ABC transporter related protein, Transport-associated OB domain-containing protein; KEGG: sugar ABC transporter ATP-binding protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.
 
  
 0.802
Bccel_5536
PFAM: ABC-type transporter, integral membrane subunit; KEGG: ABC transporter inner membrane protein.
 
  
 
0.731
cysA
Sulfate ABC transporter, ATPase subunit; Part of the ABC transporter complex CysAWTP involved in sulfate/thiosulfate import. Responsible for energy coupling to the transport system.
 
  
 0.694
Bccel_0979
Acetaldehyde dehydrogenase (acetylating); KEGG: alcohol dehydrogenase; PFAM: iron-containing alcohol dehydrogenase, Aldehyde Dehydrogenase; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.
  
  
 0.612
Bccel_2836
Fe(3+)-transporting ATPase; PFAM: ABC transporter related protein; KEGG: modC, Molybdenum transport ATP-binding protein ModC; SMART: AAA ATPase.
 
  
 0.589
Bccel_5414
Fe(3+)-transporting ATPase; PFAM: ABC transporter related protein; KEGG: modC, Molybdenum transport ATP-binding protein ModC; SMART: AAA ATPase.
 
  
 0.589
Bccel_2586
RNA-binding S4 domain protein; KEGG: ribosome-associated heat shock protein; PFAM: RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein.
   
    0.580
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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