Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Bccel_0076KEGG: hypothetical protein. (61 aa)    
Predicted Functional Partners:
Bccel_0075
Hypothetical protein.
       0.618
Bccel_0077
Hypothetical protein; KEGG: endodeoxyribonuclease RusA-like protein.
       0.491
Bccel_0078
Hypothetical protein.
       0.491
Bccel_0079
Hypothetical protein.
       0.491
Bccel_0080
KEGG: type III restriction protein res subunit; PFAM: type III restriction protein res subunit, helicase domain-containing protein; SMART: DEAD-like helicase, helicase domain-containing protein.
       0.491
Bccel_0081
KEGG: single-strand binding protein; TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n.
       0.491
Bccel_0074
Hypothetical protein.
       0.484
Bccel_0082
Hypothetical protein.
       0.473
Bccel_0083
TIGRFAM: phage/plasmid primase, P4 family; PFAM: primase P4, D5 protein; KEGG: hypothetical protein; SMART: primase P4.
       0.464
Bccel_0073
KEGG: hypothetical protein.
       0.424
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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