Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Bccel_0089KEGG: Restriction endonuclease, McrA/HNH family, phage related; PFAM: HNH endonuclease; SMART: HNH nuclease. (96 aa)    
Predicted Functional Partners:
Bccel_0093
PFAM: Terminase; KEGG: phage terminase-like protein, large subunit.
 
  
 0.899
Bccel_0096
KEGG: phage major capsid protein, HK97 family; TIGRFAM: phage major capsid protein, HK97 family; PFAM: Caudovirus, capsid.
 
   
 0.788
Bccel_3316
Sulfate adenylyltransferase, large subunit; May be the GTPase, regulating ATP sulfurylase activity. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. CysN/NodQ subfamily.
    
  0.784
Bccel_0088
Hypothetical protein.
       0.773
Bccel_1504
Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
    
  0.768
Bccel_5564
Methionine synthase; PFAM: homocysteine S-methyltransferase, cobalamin B12-binding domain protein, Methionine synthase B12-binding module cap domain protein, dihydropteroate synthase DHPS; KEGG: homocysteine S-methyltransferase; SMART: Methionine synthase B12-binding module cap domain protein.
    
  0.768
Bccel_0095
KEGG: phage head maturation protease; TIGRFAM: phage prohead protease, HK97 family; PFAM: peptidase U35 phage prohead HK97.
 
     0.724
Bccel_4311
PFAM: Terminase; KEGG: terminase.
 
  
 0.639
Bccel_2206
KEGG: hypothetical protein.
   
 
 0.611
Bccel_3036
PFAM: TRAG family protein; KEGG: TRAG family protein.
   
 
 0.611
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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