STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bccel_0094KEGG: phage portal protein; TIGRFAM: phage portal protein, HK97 family; PFAM: portal protein. (399 aa)    
Predicted Functional Partners:
Bccel_0096
KEGG: phage major capsid protein, HK97 family; TIGRFAM: phage major capsid protein, HK97 family; PFAM: Caudovirus, capsid.
   
 
 0.947
Bccel_0092
Hypothetical protein; KEGG: phage terminase small subunit.
  
  
 0.893
Bccel_0100
KEGG: Prophage pi2 protein.
  
 
 0.852
Bccel_0095
KEGG: phage head maturation protease; TIGRFAM: phage prohead protease, HK97 family; PFAM: peptidase U35 phage prohead HK97.
     
 0.821
Bccel_0093
PFAM: Terminase; KEGG: phage terminase-like protein, large subunit.
     
 0.820
Bccel_4308
KEGG: phage major capsid protein HK97 family; TIGRFAM: phage major capsid protein, HK97 family; PFAM: Caudovirus, capsid.
   
 
 0.814
Bccel_4306
PFAM: Bacteriophage QLRG family DNA packaging; KEGG: Bacteriophage QLRG family DNA packaging.
  
   0.794
Bccel_0791
Hypothetical protein.
  
   0.782
Bccel_3695
Hypothetical protein.
  
   0.782
Bccel_4302
PFAM: major tail protein TP901-1; KEGG: antigen A.
  
 
 0.779
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.