Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Bccel_0100KEGG: Prophage pi2 protein. (107 aa)    
Predicted Functional Partners:
Bccel_0096
KEGG: phage major capsid protein, HK97 family; TIGRFAM: phage major capsid protein, HK97 family; PFAM: Caudovirus, capsid.
  
 
 0.831
Bccel_0099
KEGG: phage-like protein.
       0.804
Bccel_0101
KEGG: hypothetical protein; TIGRFAM: phage protein, HK97 gp10 family; PFAM: protein HK97 gp10 family protein.
       0.780
Bccel_0102
PFAM: Protein of unknown function DUF3168; KEGG: hypothetical protein.
       0.780
Bccel_0103
KEGG: hypothetical protein.
       0.773
Bccel_4308
KEGG: phage major capsid protein HK97 family; TIGRFAM: phage major capsid protein, HK97 family; PFAM: Caudovirus, capsid.
  
 
 0.773
Bccel_0094
KEGG: phage portal protein; TIGRFAM: phage portal protein, HK97 family; PFAM: portal protein.
  
 
 0.766
Bccel_0104
KEGG: hypothetical protein.
       0.741
Bccel_0791
Hypothetical protein.
  
 
 0.715
Bccel_3695
Hypothetical protein.
  
 
 0.715
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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