STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bccel_0103KEGG: hypothetical protein. (246 aa)    
Predicted Functional Partners:
Bccel_0099
KEGG: phage-like protein.
       0.773
Bccel_0100
KEGG: Prophage pi2 protein.
       0.773
Bccel_0101
KEGG: hypothetical protein; TIGRFAM: phage protein, HK97 gp10 family; PFAM: protein HK97 gp10 family protein.
       0.773
Bccel_0102
PFAM: Protein of unknown function DUF3168; KEGG: hypothetical protein.
       0.773
Bccel_0104
KEGG: hypothetical protein.
       0.741
nrdR
Transcriptional regulator, NrdR; Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes; Belongs to the NrdR family.
    
   0.692
Bccel_1329
KEGG: peptidase M14 carboxypeptidase A; PFAM: peptidase M14 carboxypeptidase A, Peptidoglycan-binding domain 1 protein, Peptidoglycan-binding lysin domain-containing protein; SMART: Peptidoglycan-binding LysM, peptidase M14 carboxypeptidase A.
    
 0.668
Bccel_1444
KEGG: peptidase M14 carboxypeptidase A; PFAM: peptidase M14 carboxypeptidase A; SMART: peptidase M14 carboxypeptidase A.
    
 0.668
Bccel_3671
KEGG: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein, D-isomer specific 2-hydroxyacid dehydrogenase catalytic region-containing protein.
    
  0.632
Bccel_1090
Hypothetical protein; KEGG: aes, esterase/lipase.
   
 
 0.536
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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