STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bccel_0123KEGG: hypothetical protein. (221 aa)    
Predicted Functional Partners:
Bccel_0125
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein; KEGG: hypothetical protein.
 
    0.937
Bccel_0126
3-methyl-2-oxobutanoate dehydrogenase (ferredoxin); KEGG: pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein; PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein.
 
     0.905
Bccel_0127
2-oxoglutarate synthase; KEGG: 2-oxoacid:ferredoxin oxidoreductase subunit beta; PFAM: thiamine pyrophosphate TPP-binding domain-containing protein.
 
     0.896
Bccel_0128
PFAM: Pyruvate/ketoisovalerate oxidoreductase; KEGG: 2-oxoacid:ferredoxin oxidoreductase subunit gamma.
 
     0.895
Bccel_0122
PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: thiF, molybdopterin/thiamine biosynthesis protein ThiF.
       0.701
Bccel_0124
PFAM: type IV pilus assembly PilZ; KEGG: PilZ domain-containing protein.
       0.629
Bccel_0121
PFAM: NADPH-dependent FMN reductase; KEGG: multimeric flavodoxin WrbA.
 
     0.616
Bccel_4325
KEGG: DNA methylase N-4/N-6 domain-containing protein; PFAM: DNA methylase N-4/N-6 domain protein, ParB domain protein nuclease; SMART: ParB domain protein nuclease; Belongs to the N(4)/N(6)-methyltransferase family.
  
 
 0.579
Bccel_4327
KEGG: DNA methylase; PFAM: DNA methylase N-4/N-6 domain protein, ParB domain protein nuclease; SMART: ParB domain protein nuclease; Belongs to the N(4)/N(6)-methyltransferase family.
  
 
 0.579
Bccel_0073
KEGG: hypothetical protein.
  
 
 0.528
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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