STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bccel_0144KEGG: recombinase; PFAM: Recombinase, Resolvase domain-containing protein; SMART: Resolvase domain-containing protein. (507 aa)    
Predicted Functional Partners:
Bccel_0028
KEGG: resolvase domain-containing protein; PFAM: Resolvase domain-containing protein, Recombinase; SMART: Resolvase domain-containing protein; overlaps another CDS with the same product name.
  
     0.757
Bccel_0002
KEGG: recombinase; PFAM: Resolvase domain-containing protein; SMART: Resolvase domain-containing protein.
  
     0.693
Bccel_0063
KEGG: recombinase; PFAM: Resolvase domain-containing protein; SMART: Resolvase domain-containing protein.
  
     0.587
Bccel_0145
Hypothetical protein.
       0.539
Bccel_3361
PFAM: cytochrome c biogenesis protein transmembrane region; KEGG: cytochrome C biogenesis transmembrane protein.
  
    0.461
Bccel_1499
KEGG: hypothetical protein.
  
     0.417
Bccel_0146
Putative RNA polymerase, sigma 28 subunit, FliA/WhiG subfamily; KEGG: RNA polymerase sigma-27/28 subunit RpsK/SigK; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 4 domain protein.
     
 0.407
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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