Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Bccel_0147KEGG: Carbohydrate binding domain (family 25); PFAM: Carbohydrate binding family 25; SMART: Carbohydrate binding family 25. (103 aa)    
Predicted Functional Partners:
Bccel_0051
KEGG: hypothetical protein.
  
     0.768
Bccel_0550
PFAM: Tryptophan RNA-binding attenuator protein domain; KEGG: Tryptophan RNA-binding attenuator protein.
  
     0.711
Bccel_0052
PFAM: glycosyl transferase group 1; KEGG: group 1 glycosyl transferase.
  
     0.706
Bccel_1464
PFAM: HutP family protein; KEGG: HutP protein.
  
     0.663
Bccel_5661
KEGG: hypothetical protein.
  
     0.638
Bccel_4999
KEGG: protein possibly involved in post-translational modification of quorum-sensing peptides; PFAM: Accessory gene regulator B; SMART: Accessory gene regulator B.
  
     0.596
Bccel_0050
PFAM: glycoside hydrolase family 57, Domain of unknown function DUF1957; KEGG: hypothetical protein; Belongs to the glycosyl hydrolase 57 family.
  
     0.572
Bccel_2660
KEGG: hypothetical protein.
  
     0.561
Bccel_5645
PFAM: S-layer domain-containing protein; KEGG: hypothetical protein.
  
     0.554
Bccel_4891
KEGG: sporulation protein YtxC; TIGRFAM: sporulation protein YtxC; PFAM: Sporulation protein YtxC.
  
     0.539
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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