Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Bccel_0182KEGG: acylphosphatase; HAMAP : Acylphosphatase; PFAM: acylphosphatase. (154 aa)    
Predicted Functional Partners:
Bccel_0183
KEGG: (NiFe) hydrogenase maturation protein HypF; TIGRFAM: [NiFe] hydrogenase maturation protein HypF; PFAM: SUA5/yciO/yrdC domain-containing protein.
     0.993
Bccel_0186
KEGG: hydrogenase expression/formation protein HypE; TIGRFAM: hydrogenase expression/formation protein HypE; PFAM: AIR synthase related protein domain protein, AIR synthase related protein.
 
 
 0.987
Bccel_0184
KEGG: hydrogenase assembly chaperone HypC/HupF; TIGRFAM: hydrogenase assembly chaperone hypC/hupF; PFAM: hydrogenase expression/formation protein (HUPF/HYPC).
 
 
 0.970
Bccel_0185
KEGG: hydrogenase expression/formation protein HypD; TIGRFAM: hydrogenase expression/formation protein HypD; PFAM: hydrogenase formation HypD protein.
 
  
 0.963
Bccel_3485
PFAM: AIR synthase related protein domain protein, AIR synthase related protein; KEGG: AIR synthase domain-containing protein.
 
 
 0.884
Bccel_4235
KEGG: nickel-dependent hydrogenase large subunit; PFAM: nickel-dependent hydrogenase large subunit; Belongs to the [NiFe]/[NiFeSe] hydrogenase large subunit family.
 
 
 
 0.839
Bccel_4236
TIGRFAM: hydrogenase (NiFe) small subunit HydA; KEGG: hydrogenase (NiFe) small subunit HydA; PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit.
 
 
 
 0.826
hypA
Hydrogenase nickel incorporation protein hypA; Involved in the maturation of [NiFe] hydrogenases. Required for nickel insertion into the metal center of the hydrogenase.
 
   
 0.789
Bccel_5494
KEGG: hydrogenase nickel incorporation protein HypB; TIGRFAM: hydrogenase accessory protein HypB; PFAM: cobalamin synthesis protein P47K.
 
   
 0.776
Bccel_5053
PFAM: NADH-ubiquinone oxidoreductase chain 49kDa, NADH dehydrogenase (ubiquinone) 30 kDa subunit; KEGG: Ni,Fe-hydrogenase III large subunit.
     
 0.541
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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