STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bccel_0188PFAM: peptidase M16 domain protein; KEGG: peptidase M16 domain-containing protein. (260 aa)    
Predicted Functional Partners:
Bccel_0187
Hypothetical protein; KEGG: peptidase M16 domain-containing protein.
     0.994
Bccel_1219
PFAM: Rieske [2Fe-2S] iron-sulfur domain-containing protein; KEGG: glycine/D-amino acid oxidase, deaminating.
   
 0.990
Bccel_3324
PFAM: Protein of unknown function DUF2935; KEGG: hypothetical protein.
    
 0.967
Bccel_0189
PFAM: peptidase M16 domain protein; KEGG: peptidase M16-like protein.
 
  
 0.959
Bccel_0985
Hydrogenase, Fe-only; SMART: NADH:ubiquinone oxidoreductase, subunit G, iron-sulfur binding protein, iron hydrogenase small subunit; TIGRFAM: hydrogenase, Fe-only; KEGG: hydrogenase, Fe-only; PFAM: hydrogenase large subunit domain protein, iron hydrogenase small subunit, 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein, NADH:ubiquinone oxidoreductase, subunit G, iron-sulfur binding protein.
   
 
 0.926
Bccel_4955
PFAM: NADH dehydrogenase (ubiquinone) 30 kDa subunit; KEGG: NADH dehydrogenase (ubiquinone) 30 kDa subunit.
   
 
 0.910
Bccel_1204
KEGG: NmrA family protein.
   
 
 0.900
Bccel_4953
PFAM: 4Fe-4S ferredoxin, iron-sulpur binding domain-containing protein; KEGG: hypothetical protein.
  
 
 0.899
Bccel_5052
PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit, 4Fe-4S ferredoxin, iron-sulpur binding domain-containing protein; KEGG: Formate hydrogenlyase subunit 7.
  
 
 0.899
Bccel_0986
PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit, NADH ubiquinone oxidoreductase, F subunit, iron sulfur binding protein, Soluble ligand binding domain-containing protein, 4Fe-4S ferredoxin, iron-sulpur binding domain-containing protein; KEGG: respiratory-chain NADH dehydrogenase domain 51 kDa subunit; SMART: NADH ubiquinone oxidoreductase, F subunit, iron sulfur binding protein.
   
 
 0.888
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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