STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bccel_0195PFAM: cell division protein FtsL family protein; KEGG: cell division protein FtsL. (157 aa)    
Predicted Functional Partners:
Bccel_0286
KEGG: cell division septal protein.
  
 
 0.981
Bccel_0196
Putative PASTA sensor protein; PFAM: penicillin-binding protein transpeptidase, Penicillin-binding protein dimerization domain-containing protein, PASTA domain containing protein; KEGG: cell division protein FtsI/penicillin-binding protein 2; SMART: PASTA domain containing protein.
  
 
 0.903
Bccel_2583
PFAM: Septum formation initiator; KEGG: septum formation initiator.
    
 
 0.903
Bccel_2570
PFAM: penicillin-binding protein transpeptidase, PASTA domain containing protein, Penicillin-binding protein dimerization domain-containing protein; KEGG: cell division protein FtsI/penicillin-binding protein 2; SMART: PASTA domain containing protein.
  
 
 0.841
Bccel_0200
KEGG: stage V sporulation protein E; TIGRFAM: cell division protein FtsW; PFAM: cell cycle protein; Belongs to the SEDS family.
  
 
 0.820
rsmH
Ribosomal RNA small subunit methyltransferase H; Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA.
  
  
 0.814
Bccel_0136
PFAM: penicillin-binding protein transpeptidase, Penicillin-binding protein dimerization domain-containing protein; KEGG: peptidoglycan glycosyltransferase.
  
 
 0.787
Bccel_2352
TIGRFAM: penicillin-binding protein 2; KEGG: peptidoglycan glycosyltransferase; PFAM: penicillin-binding protein transpeptidase, Penicillin-binding protein dimerization domain-containing protein.
  
 
 0.787
Bccel_5265
PFAM: penicillin-binding protein transpeptidase, Penicillin-binding protein dimerization domain-containing protein; KEGG: cell division protein FtsI/penicillin-binding protein 2.
  
 
 0.787
Bccel_0192
PFAM: cell cycle protein; KEGG: rod shape-determining protein RodA; Belongs to the SEDS family.
  
 
 0.771
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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