Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Bccel_0215KEGG: hypothetical protein. (70 aa)    
Predicted Functional Partners:
Bccel_0877
KEGG: maltooligosyl trehalose hydrolase; PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain-containing protein.
   
 0.737
glgB
1,4-alpha-glucan-branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
   
 0.737
Bccel_2911
1,4-alpha-glucan branching enzyme; PFAM: alpha amylase catalytic region, glycoside hydrolase family 13 domain protein, alpha amylase all-beta; KEGG: 1,4-alpha-glucan branching enzyme; SMART: alpha amylase catalytic sub domain-containing protein.
   
 0.737
Bccel_1845
TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; KEGG: algA, mannose-1-phosphate guanylyltransferase; PFAM: Nucleotidyl transferase, mannose-6-phosphate isomerase type II; Belongs to the mannose-6-phosphate isomerase type 2 family.
  
 
 0.682
Bccel_2269
TIGRFAM: alpha-glucan phosphorylase; KEGG: alpha-glucan phosphorylase; PFAM: Glycogen phosphorylase, domain of unknown fuction DUF3417, glycosyl transferase family 35.
  
 0.681
Bccel_3925
TIGRFAM: alpha-glucan phosphorylase; KEGG: putative alpha-glucan phosphorylase; PFAM: glycosyl transferase family 35.
  
 0.681
Bccel_3423
Hypothetical protein.
    
 0.658
Bccel_2227
KEGG: competence protein ComEA; TIGRFAM: competence protein ComEA helix-hairpin-helix repeat protein; PFAM: Soluble ligand binding domain-containing protein.
  
 
 0.656
Bccel_4927
Glucose-1-phosphate thymidylyltransferase; KEGG: nucleotidyltransferase; PFAM: Nucleotidyl transferase.
  
 
 0.643
Bccel_1867
TIGRFAM: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; KEGG: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase.
  
 
 0.624
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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