STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bccel_0263PFAM: XkdN-like protein; KEGG: XkdN-like protein. (139 aa)    
Predicted Functional Partners:
Bccel_0262
PFAM: XkdM protein, phage-like element PBSX; KEGG: core tail protein.
  
    0.701
Bccel_0261
KEGG: Phage tail sheath protein.
  
    0.681
Bccel_0265
KEGG: cell wall hydrolase; PFAM: Peptidoglycan-binding lysin domain-containing protein; SMART: Peptidoglycan-binding LysM.
  
    0.649
Bccel_0268
PFAM: Phage-like element PBSX protein, XkdS; KEGG: Phage-like element PBSX protein, XkdS.
  
    0.617
Bccel_0269
PFAM: Baseplate J family protein; KEGG: baseplate J.
  
    0.616
Bccel_0258
PFAM: protein HK97 gp10 family protein; KEGG: hypothetical protein.
  
    0.606
Bccel_0259
KEGG: hypothetical protein.
       0.526
Bccel_0257
KEGG: hypothetical protein.
       0.514
Bccel_0260
Hypothetical protein.
       0.508
Bccel_0270
PFAM: Protein of unknown function DUF2313; KEGG: hypothetical protein.
  
    0.508
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.