STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bccel_0280KEGG: hypothetical protein. (486 aa)    
Predicted Functional Partners:
Bccel_1276
PFAM: cytochrome c assembly protein; KEGG: cytochrome c assembly protein.
  
 
 0.863
Bccel_3112
PFAM: cytochrome c assembly protein; KEGG: cytochrome c assembly protein.
  
 
 0.863
Bccel_1137
PFAM: Tetratricopeptide TPR_1 repeat-containing protein; KEGG: hypothetical protein.
 
 0.837
Bccel_1175
PFAM: Tetratricopeptide repeat-containing protein; KEGG: hypothetical protein.
 
 0.825
ribB
3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the N-terminal section; belongs to the DHBP synthase family.
    
  0.788
Bccel_1067
PFAM: N-terminal acetyltransferase A, auxiliary subunit, Tetratricopeptide repeat-containing protein; KEGG: Tetratricopeptide repeat family.
  
 0.707
Bccel_1060
KEGG: methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer, histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer, histidine kinase HAMP region domain protein.
   
  0.675
Bccel_4453
Methyl-accepting chemotaxis sensory transducer; KEGG: sugar ABC transporter periplasmic protein; PFAM: Periplasmic binding protein domain, chemotaxis sensory transducer; SMART: chemotaxis sensory transducer.
   
  0.675
Bccel_4831
KEGG: putative methyl-accepting chemotaxis protein; PFAM: chemotaxis sensory transducer, 4HB MCP domain, histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer, histidine kinase HAMP region domain protein.
   
  0.675
Bccel_4832
KEGG: putative methyl-accepting chemotaxis protein; PFAM: chemotaxis sensory transducer, histidine kinase HAMP region domain protein, 4HB MCP domain; SMART: chemotaxis sensory transducer, histidine kinase HAMP region domain protein.
   
  0.675
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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