STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bccel_0304PFAM: ATPase associated with various cellular activities AAA_3; KEGG: MoxR-like ATPase. (325 aa)    
Predicted Functional Partners:
Bccel_0305
PFAM: protein of unknown function DUF58; KEGG: hypothetical protein.
  
 0.871
Bccel_0302
KEGG: hypothetical protein.
       0.782
Bccel_0303
KEGG: hypothetical protein.
       0.781
Bccel_0301
Hypothetical protein; KEGG: glycerophosphoryl diester phosphodiesterase-like protein.
       0.695
Bccel_3954
KEGG: hypothetical protein; PFAM: protein of unknown function DUF58; SMART: von Willebrand factor type A.
  
 0.664
Bccel_1535
KEGG: transglutaminase; PFAM: transglutaminase domain-containing protein, Domain of unknown function DUF4129; SMART: transglutaminase domain-containing protein.
 
  
 0.602
Bccel_3952
TIGRFAM: double-transmembrane region domain protein; PFAM: Aerotolerance regulator N-terminal; KEGG: hypothetical protein; SMART: von Willebrand factor type A.
 
 
 0.529
Bccel_5047
KEGG: transglutaminase; PFAM: transglutaminase domain-containing protein, Domain of unknown function DUF4129; SMART: transglutaminase domain-containing protein.
 
  
 0.524
Bccel_3951
SMART: von Willebrand factor type A; KEGG: Mg-chelatase subunit ChlD.
 
 
 0.514
Bccel_2434
KEGG: arginine/lysine/ornithine decarboxylase; PFAM: Orn/Lys/Arg decarboxylase major region, Orn/Lys/Arg decarboxylase domain protein.
   
 
 0.508
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.