STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bccel_0306PFAM: protein of unknown function DUF95 transmembrane; KEGG: hypothetical protein. (318 aa)    
Predicted Functional Partners:
Bccel_0307
PFAM: RDD domain containing protein; KEGG: putative membrane protein/domain protein.
    0.990
Bccel_0305
PFAM: protein of unknown function DUF58; KEGG: hypothetical protein.
 
  
 0.795
Bccel_0302
KEGG: hypothetical protein.
 
     0.776
Bccel_5317
PFAM: protein of unknown function DUF58; KEGG: hypothetical protein.
 
  
 0.612
Bccel_5186
KEGG: hypothetical protein; PFAM: Protein of unknown function DUF3520, Uncharacterized protein family YfbK; SMART: von Willebrand factor type A.
  
     0.571
Bccel_5384
PFAM: TROVE domain-containing protein; KEGG: TROVE domain protein.
  
     0.499
Bccel_1961
KEGG: stage III sporulation protein AB; TIGRFAM: stage III sporulation protein AB; PFAM: Sporulation stage III protein AB.
   
  
 0.492
Bccel_2421
KEGG: hypothetical protein.
   
  
 0.479
Bccel_4085
PFAM: TROVE domain-containing protein; KEGG: TROVE domain protein.
  
     0.477
Bccel_1960
KEGG: stage III sporulation protein AC; TIGRFAM: stage III sporulation protein AC; PFAM: Stage III sporulation protein AC/AD family.
   
  
 0.446
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.