STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bccel_0314PFAM: Protein of unknown function DUF2953; KEGG: hypothetical protein. (239 aa)    
Predicted Functional Partners:
Bccel_0315
KEGG: sporulation protein YtfJ; TIGRFAM: sporulation protein YtfJ; PFAM: Sporulation protein YtfJ.
 
    0.931
Bccel_3507
PFAM: PRC-barrel domain protein; KEGG: PRC-barrel domain-containing protein.
  
     0.721
scpB
Chromosome segregation and condensation protein, ScpB; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves.
       0.694
scpA
Segregation and condensation protein A; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves.
       0.650
Bccel_5209
PFAM: protein of unknown function UPF0180; KEGG: hypothetical protein.
  
     0.626
Bccel_2225
PFAM: Anti-sigma factor RsgI, N-terminal; KEGG: glycoside hydrolase.
  
     0.593
Bccel_1499
KEGG: hypothetical protein.
  
     0.575
Bccel_4121
PFAM: protein of unknown function DUF1450; KEGG: hypothetical protein.
  
     0.566
Bccel_0156
PFAM: Sporulation protein YtfJ; KEGG: hypothetical protein.
  
    0.542
Bccel_2803
PFAM: Sporulation protein YtfJ; KEGG: hypothetical protein.
  
    0.542
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.