STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bccel_0329PFAM: peptidase A24A prepilin type IV; KEGG: peptidase A24A prepilin type IV. (206 aa)    
Predicted Functional Partners:
Bccel_0327
Hypothetical protein; KEGG: chromosome segregation ATPase-like protein.
 
     0.821
Bccel_0328
PFAM: TadE family protein; KEGG: TadE-like protein.
  
  
 0.798
Bccel_0326
PFAM: TadE family protein; KEGG: TadE-like protein.
  
  
 0.753
Bccel_0321
PFAM: AAA domain; KEGG: hypothetical protein.
 
  
 0.731
Bccel_0324
PFAM: Type II secretion system F domain-containing protein; KEGG: Type II secretion system F domain.
 
  
 0.725
Bccel_0323
PFAM: Type II secretion system F domain-containing protein; KEGG: Type II secretion system F domain.
 
  
 0.701
Bccel_0330
KEGG: FHA domain-containing protein; PFAM: Forkhead-associated protein; SMART: Forkhead-associated protein.
 
     0.696
Bccel_0352
TIGRFAM: Flp pilus assembly protein CpaB; PFAM: SAF domain protein; KEGG: Flp pilus assembly protein CpaB; SMART: SAF domain protein.
  
  
 0.612
Bccel_3026
KEGG: SAF domain-containing protein; PFAM: SAF domain protein; SMART: SAF domain protein.
  
  
 0.612
Bccel_4786
SAF domain protein; KEGG: hypothetical protein; PFAM: SAF domain protein; SMART: SAF domain protein.
  
  
 0.612
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.